Reference Genomes

Comprehensive collection of Daphnia reference genomes

Species name Taxonomy Strain or isolate Assembly level Annotation Note
Daphnia pulexBranchiopoda; Diplostraca; Daphniidae; DaphniaKAP4ChromosomeNCBI; iDaphniaDaphnia pulex reference genome
Daphnia pulexBranchiopoda; Diplostraca; Daphniidae; DaphniaKAP106ChromosomeiDaphniaDaphnia pulex reference genome (a non-male producing isolate)
Daphnia pulexBranchiopoda; Diplostraca; Daphniidae; DaphniaSTM2ChromosomeiDaphniaDaphnia pulex reference genome (an obligately parthenogenetic isolate)
Daphnia carinataBranchiopoda; Diplostraca; Daphniidae; DaphniaCSIRO-1ChromosomeNCBI; iDaphniaDaphnia carinata reference genome
Daphnia galeataBranchiopoda; Diplostraca; Daphniidae; DaphniaM5ScaffoldiDaphniaDaphnia galeata reference genome
Daphnia magnaBranchiopoda; Diplostraca; Daphniidae; DaphniaNIESChromosomeNCBI; iDaphniaDaphnia magna reference genome
Daphnia obtusaBranchiopoda; Diplostraca; Daphniidae; DaphniaFS6ChromosomeiDaphniaDaphnia obtusa reference genome
Daphnia pulicariaBranchiopoda; Diplostraca; Daphniidae; DaphniaLK16ChromosomeiDaphniaDaphnia pulicaria reference genome
Daphnia pulicariaBranchiopoda; Diplostraca; Daphniidae; DaphniaSC F1-1AChromosomeNCBI; iDaphniaDaphnia pulicaria reference genome (alternative)
Daphnia sinensisBranchiopoda; Diplostraca; Daphniidae; DaphniaWSLChromosomeOwnerDaphnia sinensis reference genome
Daphnia arabicaBranchiopoda; Diplostraca; Daphniidae; DaphniaScaffoldOwnerDaphnia arabica reference genome
Daphnia arenataBranchiopoda; Diplostraca; Daphniidae; DaphniaOA85ChromosomeiDaphniaDaphnia arenata reference genome
Daphnia lumholtziBranchiopoda; Diplostraca; Daphniidae; DaphniaSAGChromosomeiDaphniaDaphnia lumholtzi reference genome
Daphnia catawbaBranchiopoda; Diplostraca; Daphniidae; DaphniaEL19-05ChromosomeiDaphniaDaphnia catawba reference genome
Daphnia dentiferaBranchiopoda; Diplostraca; Daphniidae; DaphniaL002ChromosomeiDaphniaDaphnia dentifera reference genome
Daphnia mitsukuriBranchiopoda; Diplostraca; Daphniidae; DaphniaSZH4ChromosomeiDaphniaDaphnia mitsukuri reference genome
Daphnia pulexBranchiopoda; Diplostraca; Daphniidae; DaphniaBEL2ChromosomeiDaphniaEuropean Daphnia pulex reference genome
Daphnia ambiguaBranchiopoda; Diplostraca; Daphniidae; DaphniaQ001ChromosomeiDaphniaDaphnia ambigua reference genome
Daphnia melanicaBranchiopoda; Diplostraca; Daphniidae; DaphniaCON6ChromosomeiDaphniaDaphnia melanica reference genome
Daphnia parvulaBranchiopoda; Diplostraca; Daphniidae; DaphniaL001ChromosomeiDaphniaDaphnia parvula reference genome
Simocephalus vetulusBranchiopoda; Diplostraca; Daphniidae; SimocephalusND19-001ChromosomeiDaphniaSimocephalus vetulus reference genome
Daphnia magnicepsBranchiopoda; Diplostraca; Daphniidae; DaphniaGM20-03ChromosomeiDaphniaDaphnia magniceps reference genome

Note

we provide a comprehensive database containing genomic information for all sequenced Daphnia species and closely related species, including numerous datasets that have not yet been published.